Toolboxes

We have developed several open source packages and tools for omics data analysis. 

For more details, visit https://github.com/krumsieklab

• AutoFocus
  Multi-omics exploration tool
  github | preprint

• maplet
  R toolbox for standardized data analysis pipelines
  github | paper

• Subgroup Identification (SGI)
  Tool for clinical subgroup identification based on omics data
  github | paper

• MoDentify
  Automatic network module identification based on Gaussian Graphical models
  github | paper

• Odefy
  Automatic generation of ordinary differential equations (ODE) from boolean rules
  github | paper

• Gepard
  Genome-scale dotplot-based sequence analysis tool
  github | paper